Publications Biochemical Networks

Latest Publications

  • Y. Mulla, H. Wierenga, C. Alkemade, P.R. Wolde and G.H. Koenderink, Frustrated binding of biopolymer crosslinkers, Soft Matter 15, 14: 3036-3042 (2019)

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  • T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom and P.R. Wolde, eGFRD in all dimensions, J. Chem. Phys. 150, 054108: 1-24 (2019)

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  • J.M. Poulton, P.R. Wolde and T.E. Ouldridge, Nonequilibrium correlations in minimal dynamical models of polymer copying, PNAS 116, 6: 1946-1951 (2019)

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  • K. Bielec, K. Sozansky, M. Seynen, Z. Dziekan, P.R. Wolde and R. Holyst, Kinetics and equilibrium constants of oligonucleotides at low concentrations. Hybridization and melting study, Phys. Chem. Chem. Phys. 21, 20: 10798-10807 (2019)

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  • T.E. Ouldridge, R.A. Brittain and P.R. Wolde: The power of being explicit: demystifying work, heat, and free energy in the physics of computation In: The Energetics of Computing in Life and Machines, SFI Press, 2018.

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  • M. Monti, D.K. Lubensky and P.R. Wolde, Robustness of Clocks to Input Noise, Phys.Rev.Lett. 121, (7) 078101: 1-6 (2018)

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  • A. Vijaykumar, P.R. Wolde and P.G. Bolhuis, Generalised expressions for the association and dissociation rate constants of molecules with multiple binding sites, Mol. Phys. 116, 21-22: 3042-3054 (2018)

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  • M. Monti, A theoretical study of circadian clocks and circadian metabolism, VU University Amsterdam, 2018-04-12

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  • H. Wierenga, P.R. Wolde and N.B. Becker, Quantifying fluctuations in reversible enzymatic cycles and clocks, Phys. Rev. E 97, 042404: 1-6 (2018)

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  • A. Vijaykumar, P.R. Wolde and P.G. Bolhuis, Rate constants for proteins binding to substrates with multiple binding sites using a generalized forward flux sampling expression, J. Chem. Phys. 148, 12: 124109: 1-11 (2018)

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