Biochemical Networks

Y. Mulla, H. Wierenga, C. Alkemade, P.R. Wolde and G.H. Koenderink, Frustrated binding of biopolymer crosslinkers, Soft Matter 15, 14: 3036-3042 (2019)

T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom and P.R. Wolde, eGFRD in all dimensions, J. Chem. Phys. 150, 054108: 1-24 (2019)

J.M. Poulton, P.R. Wolde and T.E. Ouldridge, Nonequilibrium correlations in minimal dynamical models of polymer copying, PNAS 116, 6: 1946-1951 (2019)

K. Bielec, K. Sozansky, M. Seynen, Z. Dziekan, P.R. Wolde and R. Holyst, Kinetics and equilibrium constants of oligonucleotides at low concentrations. Hybridization and melting study, Phys. Chem. Chem. Phys. 21, 20: 10798-10807 (2019)

T.E. Ouldridge, R.A. Brittain and P.R. Wolde: The power of being explicit: demystifying work, heat, and free energy in the physics of computation In: The Energetics of Computing in Life and Machines, SFI Press, 2018.

M. Monti, D.K. Lubensky and P.R. Wolde, Robustness of Clocks to Input Noise, Phys.Rev.Lett. 121, (7) 078101: 1-6 (2018)

A. Vijaykumar, P.R. Wolde and P.G. Bolhuis, Generalised expressions for the association and dissociation rate constants of molecules with multiple binding sites, Mol. Phys. 116, 21-22: 3042-3054 (2018)

M. Monti, A theoretical study of circadian clocks and circadian metabolism, VU University Amsterdam, 2018-04-12

H. Wierenga, P.R. Wolde and N.B. Becker, Quantifying fluctuations in reversible enzymatic cycles and clocks, Phys. Rev. E 97, 042404: 1-6 (2018)

A. Vijaykumar, P.R. Wolde and P.G. Bolhuis, Rate constants for proteins binding to substrates with multiple binding sites using a generalized forward flux sampling expression, J. Chem. Phys. 148, 12: 124109: 1-11 (2018)