Publications - Biochemical Networks

M. Vennettilli, K. Ramachandran and A. Mugler, Near-critical gene expression in embryonic boundary precision, Phys. Rev. E 112, (3), 034410: 1-6 (2025)

A. Das and P.R. ten Wolde, Exact Computation of Transfer Entropy with Path Weight Sampling, Phys. Rev. Lett. 135, (10), 107404: 1-9 (2025)

L. Olivi, S. Köstlbacher, C. Ludwig, M. Langendoen, N.J. Claassens, T.J.G. Ettema, J. van der Oost, P.R. ten Wolde, J. Hohlbein and R.H.J. Staals, The Escherichia coli replication initiator DnaA is titrated on the chromosome, Nat. Commun. 16, (1), 7813: 1-18 (2025)

A.J. Tjalma, Optimal Cellular Prediction, VU University Amsterdam, 2025-06-19

M. Reinhardt, Quantifying the Flow of Information, VU University Amsterdam, 2025-06-13

J. Hurbain, P.R. ten Wolde and P.S. Swain, Quantifying the nuclear localization of fluorescently tagged proteins, Bioinform. Adv. 5, (1), vbaf114: 1-8 (2025)

D. Mulder, T.E. Ouldridge and P.R. ten Wolde, Bit reset protocols that obey activity-constrained speed limits do not minimize work for a given speed, Phys. Rev. E 111, (4), 044141: 1-15 (2025)

G. Tkačik and P.R. ten Wolde, Information Processing in Biochemical Networks, Annu. Rev. Biophys. 54, (1), 249-274 (2025)

D. Mulder, P.R. ten Wolde and T.E. Ouldridge, Exploiting bias in optimal finite-time copying protocols, Phys. Rev. Research 7, (1), L012026: 1-6 (2025)

V. Galstyan and P.R. ten Wolde, Quantifying the genetic origins of body plan scaling, PNAS 121, (1), e2422340121: 1-3 (2025)