Publications - Biochemical Networks

  • A. Vijaykumar, Multi-Scale simulation of reaction-diffusion systems, University of Amsterdam, UvA, 2017-10-24

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations, Biophys. J. 113, (1), 157-173 (2017)

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Robustness of synthetic oscillators in growing and dividing cells, Phys. Rev. E 95, (5, Article number: 052403) (2017)

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  • T.E. Ouldridge and P.R. ten Wolde, Fundamental costs in the production and destruction of persistent polymer copies, Phys. Rev. Lett. 118, (Article number: 158103), 1-5 (2017)

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  • T.E. Ouldridge, C.C. Govern and P.R. ten Wolde, Thermodynamics of Computational Copying in Biochemical Systems, Phys. Rev. X 7, (2, Article number: 021004), 1-13 (2017)

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  • A. Vijaykumar, T.E. Ouldridge, P.R. ten Wolde and P.G. Bolhuis, Multiscale simulations of anisotropic particles combining molecular dynamics and Green's function reaction dynamics, J. Chem. Phys. 146, (11, Article number: 114106), 1-12 (2017)

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, A thermodynamically consistent model of the post-translational Kai circadian clock, PLoS Comput. Biol. 13, (3, Article number: e1005415), 1-43 (2017)

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  • J. Paijmans, A computational study of the robustness of cellular oscillators, VU University Amsterdam, 2017-01-20

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  • T. McGrath, N.S. Jones, P.R. ten Wolde and T.E. Ouldridge, Biochemical Machines for the Interconversion of Mutual Information and Work, Phys. Rev. Lett. 118, (2, Article number: 028101), 1-5 (2017)

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  • A. Vijaykumar, P.G. Bolhuis and P.R. ten Wolde, The intrinsic rate constants in diffusion-influenced reactions, Faraday Discuss. 195, 421-441 (2016)

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