Publications - Biochemical Networks

  • H. Wierenga, P.R. ten Wolde and N.B. Becker, Quantifying fluctuations in reversible enzymatic cycles and clocks, Phys. Rev. E 97, (042404), 1-6 (2018)

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  • A. Vijaykumar, P.R. ten Wolde and P.G. Bolhuis, Rate constants for proteins binding to substrates with multiple binding sites using a generalized forward flux sampling expression, J. Chem. Phys. 148, (12), 124109: 1-11 (2018)

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  • M. Monti, D.K. Lubensky and P.R. ten Wolde, Optimal entrainment of circadian clocks in the presence of noise, Phys. Rev. E 97, (3, Article number: 032405), 1-23 (2018)

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  • J. Paijmans, Telling time while dividing, Amsterdam Sci. (2017)

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  • M. Braun, Z. Lansky, A. Szuba, A. Zelena, F.W. Schwarz, A. Mitra, M. Gao, A. Lüdecke, P.R. ten Wolde and S. Diez, Changes in microtubule overlap length regulate kinesin-14-driven microtubule sliding, Nature Chem. Biol. 13, (12), 1245-1252 (2017)

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  • A. Vijaykumar, P.R. ten Wolde and P.G. Bolhuis, The magnitude of the intrinsic rate constant: How deep can association reactions be in the diffusion limited regime?, J. Chem. Phys. 147, (18, Article number: 184108), 1-11 (2017)

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  • A. Vijaykumar, Multi-Scale simulation of reaction-diffusion systems, University of Amsterdam UvA, 2017-10-24

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations, Biophys. J. 113, (1), 157-173 (2017)

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Robustness of synthetic oscillators in growing and dividing cells, Phys. Rev. E 95, (5, Article number: 052403) (2017)

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  • T.E. Ouldridge and P.R. ten Wolde, Fundamental costs in the production and destruction of persistent polymer copies, Phys.Rev.Lett. 118, (Article number: 158103), 1-5 (2017)

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