Publications - Biochemical Networks

Y. Mulla, H. Wierenga, C. Alkemade, P.R. ten Wolde and G.H. Koenderink, Frustrated binding of biopolymer crosslinkers, Soft Matter 15, (14), 3036-3042 (2019)

T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, A.M. Dogterom and P.R. ten Wolde, eGFRD in all dimensions, J. Chem. Phys. 150, (5), 054108: 1-24 (2019)

J.M. Poulton, P.R. ten Wolde and T.E. Ouldridge, Nonequilibrium correlations in minimal dynamical models of polymer copying, PNAS 116, (6), 1946-1951 (2019)

T.E. Ouldridge, R.A. Brittain and P.R. ten Wolde: The power of being explicit: demystifying work, heat, and free energy in the physics of computation In: The Energetics of Computing in Life and Machines, SFI Press, 2018.

M. Monti, D.K. Lubensky and P.R. ten Wolde, Robustness of Clocks to Input Noise, Phys. Rev. Lett. 121, ((7) 078101), 1-6 (2018)

A. Vijaykumar, P.R. ten Wolde and P.G. Bolhuis, Generalised expressions for the association and dissociation rate constants of molecules with multiple binding sites, Mol. Phys. 116, (21-22), 3042-3054 (2018)

M. Monti, A theoretical study of circadian clocks and circadian metabolism, VU University Amsterdam, 2018-04-12

H. Wierenga, P.R. ten Wolde and N.B. Becker, Quantifying fluctuations in reversible enzymatic cycles and clocks, Phys. Rev. E 97, (042404), 1-6 (2018)

A. Vijaykumar, P.R. ten Wolde and P.G. Bolhuis, Rate constants for proteins binding to substrates with multiple binding sites using a generalized forward flux sampling expression, J. Chem. Phys. 148, (12), 124109: 1-11 (2018)

M. Monti, D.K. Lubensky and P.R. ten Wolde, Optimal entrainment of circadian clocks in the presence of noise, Phys. Rev. E 97, (3, Article number: 032405), 1-23 (2018)