Publications - Biochemical Networks

  • M. Howard and P.R. ten Wolde, Finding the center reliably: robust patterns of developmental gene expression, Phys. Rev. Lett. 95, (20, Article number: 208103), 1-4 (2005)

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  • J.S. van Zon and P.R. ten Wolde, Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space, J. Chem. Phys. 123, (Article number: 234910), 1-16 (2005)

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  • J.S. van Zon and P.R. ten Wolde, Simulating biochemical networks at the particle level and in time and space: Green's function reaction dynamics, Phys. Rev. Lett. 94, (Article number: 128103), 1-4 (2005)

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  • D. Moroni, P.R. ten Wolde and P.G. Bolhuis, Interplay between structure and size in a critical crystal nucleus, Phys. Rev. Lett. 94, (Article number: 235703), 1-4 (2005)

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  • R.J. Allen, P.B. Warren and P.R. ten Wolde, Genen als moleculaire (sub)microprocessoren, NTvN 71, 188-191 (2005)

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  • R.J. Allen, P.B. Warren and P.R. ten Wolde, Sampling rare switching events in biochemical networks, Phys. Rev. Lett. 94, (Article number: 18104), 1-4 (2005)

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  • P.B. Warren and P.R. ten Wolde, Chemical models of genetic toggle switches, J. Phys. Chem. B 109, 6812-6823 (2005)

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  • P.B. Warren and P.R. ten Wolde, Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli, J. Mol. Biol. 342, 1379-1390 (2004)

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  • P.B. Warren and P.R. ten Wolde, Enhancement of the stability of genetic switches by overlapping upstream regulatory domains, Phys. Rev. Lett. 92, (Article number: 128101), 1-4 (2004)

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  • N. Combe, T.J.H. Vlugt, P.R. ten Wolde and D. Frenkel, Dynamic pruned-enriched Rosenbluth method., Mol. Phys. 101, 1675-1682 (2003)

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