Publications - Biochemical Networks

  • J. Paijmans, Telling time while dividing, Amsterdam Sci. (2017)

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  • M. Braun, Z. Lansky, A. Szuba, A. Zelena, F.W. Schwarz, A. Mitra, M. Gao, A. Lüdecke, P.R. ten Wolde and S. Diez, Changes in microtubule overlap length regulate kinesin-14-driven microtubule sliding, Nature Chem. Biol. 13, (12), 1245-1252 (2017)

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  • A. Vijaykumar, P.R. ten Wolde and P.G. Bolhuis, The magnitude of the intrinsic rate constant: How deep can association reactions be in the diffusion limited regime?, J. Chem. Phys. 147, (18, Article number: 184108), 1-11 (2017)

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  • A. Vijaykumar, Multi-Scale simulation of reaction-diffusion systems, University of Amsterdam UvA, 2017-10-24

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations, Biophys. J. 113, (1), 157-173 (2017)

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, Robustness of synthetic oscillators in growing and dividing cells, Phys. Rev. E 95, (5, Article number: 052403) (2017)

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  • T.E. Ouldridge and P.R. ten Wolde, Fundamental costs in the production and destruction of persistent polymer copies, Phys. Rev. Lett. 118, (Article number: 158103), 1-5 (2017)

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  • T.E. Ouldridge, C.C. Govern and P.R. ten Wolde, Thermodynamics of Computational Copying in Biochemical Systems, Phys. Rev. X 7, (2, Article number: 021004), 1-13 (2017)

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  • A. Vijaykumar, T.E. Ouldridge, P.R. ten Wolde and P.G. Bolhuis, Multiscale simulations of anisotropic particles combining molecular dynamics and Green's function reaction dynamics, J. Chem. Phys. 146, (11, Article number: 114106), 1-12 (2017)

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  • J. Paijmans, D.K. Lubensky and P.R. ten Wolde, A thermodynamically consistent model of the post-translational Kai circadian clock, PLoS Comput. Biol. 13, (3, Article number: e1005415), 1-43 (2017)

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