Publications - Biochemical Networks

B. Qureshi, J. Juritz, J.M. Poulton, A. Beersing-Vasquez and T.E. Ouldridge, A universal method for analyzing copolymer growth, J. Chem. Phys. 158, (10), 104906: 1-23 (2023)

D. de Groot, A.J. Tjalma, F.J. Bruggeman and E. van Nimwegen, Effective bet-hedging through growth rate dependent stability, PNAS 120, (8), 2211091120: 1-10 (2023)

M. Berger and P.R. ten Wolde, Robust replication initiation from coupled homeostatic mechanisms, Nature Commun. 13, (1), 6556: 1-13 (2022)

H. Wierenga and P.R. ten Wolde, Energetic constraints on filament-mediated cell polarization, Phys. Rev. E 105, (5), 064406: 1-14 (2022)

G. Malaguti and P.R. ten Wolde, Receptor time integration via discrete sampling, Phys. Rev. E 105, (5), 054406: 1-16 (2022)

C. Alkemade, H. Wierenga, V.A. Volkov, M. Preciado López, A. Akhmanova, P.R. ten Wolde, A.M. Dogterom and G.H. Koenderink, Cross-linkers at growing microtubule ends generate forces that drive actin transport, PNAS 119, (11), e2112799119 : 1-12 (2022)

J. Juritz, J.M. Poulton and T.E. Ouldridge, Minimal mechanism for cyclic templating of length-controlled copolymers under isothermal conditions, J. Chem. Phys. 156, (7), 074103: 1-21 (2022)

A. Cumberworth, D. Frenkel and A. Reinhardt, Simulations of DNA-Origami Self-Assembly Reveal Design-Dependent Nucleation Barriers, Nano Lett. 22, (17), 6916-6922 (2022)

L. Olivi, M. Berger, R.N.P. Creyghton, N. De Franceschi, C. Dekker, B.M. Mulder, N.J. Claassens, P.R. ten Wolde and J. van der Oost, Towards a synthetic cell cycle, Nature Commun. 12, (1), 4531: 1-11 (2021)

H. Wierenga, Statistical Mechanics of Cytoskeletal Filaments, VU University Amsterdam, 2021-05-17