Publications - Biochemical Networks

  • T. Erdmann, M. Howard and P.R. ten Wolde, Role of spatial averaging in the precision of gene expression patterns, Phys. Rev. Lett. 103, (Article number: 258101), 1-4 (2009)

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  • R.J. Allen, C. Valeriani and P.R. ten Wolde, Forward flux sampling for rare event simulations, J. Phys.: Condens. Matter 21, (Article number: 463102), 1-21 (2009)

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  • S.B. van Albada, S. Tanase-Nicola and P.R. ten Wolde, The switching dynamics of the bacterial flagellar motor, Mol. Syst. Biol. 5, (Article number: 316), 1-8 (2009)

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  • W.H. de Ronde, B.C. Daniels, A. Mugler, N.A. Sinitsyn and I. Nemenman, Mesoscopic statistical properties of multistep enzyme-mediated reactions, IET Syst. Biol. 3, 429-437 (2009)

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  • S.B. van Albada and P.R. ten Wolde, Differential affinity and catalytic activity of CheZ in E. coli chemotaxis, PLoS Comput. Biol. 5, (Article number: 1000378), 1-13 (2009)

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  • F. Tostevin and P.R. ten Wolde, Mutual information between input and output trajectories of biochemical networks, Phys. Rev. Lett. 102, (Article number: 218101), 1-4 (2009)

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  • M.J. Morelli, P.R. ten Wolde and R.J. Allen, DNA looping provides stability and robustness to the bacteriophage λ switch, PNAS 106, (20), 8101-8106 (2009)

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  • R. Hermsen, Transcription regulation and genome organization, VU University Amsterdam, 2008-10-28

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  • S.B. van Albada, A computational study of E. coli chemotaxis, VU University Amsterdam, 2008-09-08

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  • M.J. Morelli, S. Tanase-Nicola, R.J. Allen and P.R. ten Wolde, Reaction coordinates for the flipping of genetic switches, Biophys. J. 94, 3413-3423 (2008)

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