Publications - Biochemical Networks

S. Meyer, N.B. Becker, S.H. Syed, D. Goutte-Gattat, M.S. Shukla, J.J. Hayes, D. Angelov, J. Bednar, S. Dimitrov and R. Everaers, From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem, Nucleic Acids Res. 39, (21), 9139-9154 (2011)

W.H. de Ronde, F. Tostevin and P.R. ten Wolde, Multiplexing biochemical signals, Phys. Rev. Lett. 107, (4) (2011)

F. Tostevin, Precision of sensing cell length via concentration gradients, Biophys. J. 100, (2), 294-303 (2011)

D. Zwicker, D.K. Lubensky and P.R. ten Wolde, Robust circadian clocks from coupled protein-modification and transcription–translation cycles, PNAS 107, (52), 22540-22545 (2010)

W.H. de Ronde, F. Tostevin and P.R. ten Wolde, Effect of feedback on the fidelity of information transmission for time-varying signals, Phys. Rev. E 82, (3, Article number: 31914), 1-21 (2010)

F. He, T. Saunders, Y. Wen, R. Jiao, P.R. ten Wolde, M. Howard and J. Ma, Shaping a morphogen gradient for positional information, Biophys. J. 99, 697-707 (2010)

C. Tischer, P.R. ten Wolde and A.M. Dogterom, Providing positional information with active transport on dynamic microtubules, Biophys. J. 99, (3), 726-735 (2010)

F. Tostevin and P.R. ten Wolde, Mutual information in time-varying biochemical systems, Phys. Rev. E 81, (06, Article number: 61917), 1-15 (2010)

R. Hermsen, B. Ursem and P.R. ten Wolde, Combinatorial gene regulation using auto-regulation, PLoS Comput. Biol. 6, (6, Article number: 1000813), 1-13 (2010)

K. Takahashi, S. Tanase-Nicola and P.R. ten Wolde, Spatio-temporal correlations can drastically change the response of a MAPK pathway, PNAS 107, (6), 2473-2478 (2010)