Publications - Biochemical Networks

  • R. Hermsen, Transcription regulation and genome organization, VU University Amsterdam, 2008-10-28

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  • S.B. van Albada, A computational study of E. coli chemotaxis, VU University Amsterdam, 2008-09-08

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  • R. Hermsen, P.R. ten Wolde and S. Teichmann, Chance and necessity in chromosomal gene distributions, Trends Genet. 24, 216-219 (2008)

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  • S. Tanase-Nicola and P.R. ten Wolde, Regulatory control and the costs and benefits of biochemical noise, PLoS Comput. Biol. 4, (Article number: 1000125), 1-13 (2008)

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  • R.J. Allen, C. Valeriani, S. Tanase-Nicola, P.R. ten Wolde and D. Frenkel, Homogeneous nucleation under shear in a two-dimensional ising model : cluster growth, coalescence and breakup, J. Chem. Phys. 129, (Article number: 134704), 1-11 (2008)

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  • M.J. Morelli and P.R. ten Wolde, Reaction Brownian dynamics and the effect of spatial fluctuations on the gain of a push-pull network, J. Chem. Phys. 129, (Article number: 54112), 1-11 (2008)

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  • M.J. Morelli, S. Tanase-Nicola, R.J. Allen and P.R. ten Wolde, Reaction coordinates for the flipping of genetic switches, Biophys. J. 94, 3413-3423 (2008)

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  • M.J. Morelli, R.J. Allen, S. Tanase-Nicola and P.R. ten Wolde, Eliminating fast reactions in stochastic simulations of biochemical networks : a bistable genetic switch, J. Chem. Phys. 128, (Article number: 45105), 1-13 (2008)

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  • M.J. Morelli, Fluctuations in genetic networks: a computational study, University of Amsterdam UvA, 2007-10-18

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  • S.B. van Albada and P.R. ten Wolde, Enzyme localization can drastically affect signal amplification in signal transduction pathways, PLoS Comput. Biol. 3, (Article number: 195), 1-10 (2007)

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