Publications - Biochemical Networks

  • F. Tostevin and P.R. ten Wolde, Mutual information in time-varying biochemical systems, Phys. Rev. E 81, (06, Article number: 61917), 1-15 (2010)

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  • R. Hermsen, B. Ursem and P.R. ten Wolde, Combinatorial gene regulation using auto-regulation, PLoS Comput. Biol. 6, (6, Article number: 1000813), 1-13 (2010)

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  • K. Takahashi, S. Tanase-Nicola and P.R. ten Wolde, Spatio-temporal correlations can drastically change the response of a MAPK pathway, PNAS 107, (6), 2473-2478 (2010)

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  • T. Erdmann, M. Howard and P.R. ten Wolde, Role of spatial averaging in the precision of gene expression patterns, Phys.Rev.Lett. 103, (Article number: 258101), 1-4 (2009)

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  • R.J. Allen, C. Valeriani and P.R. ten Wolde, Forward flux sampling for rare event simulations, J. Phys.: Condens. Matter 21, (Article number: 463102), 1-21 (2009)

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  • S.B. van Albada, S. Tanase-Nicola and P.R. ten Wolde, The switching dynamics of the bacterial flagellar motor, Mol. Syst. Biol. 5, (Article number: 316), 1-8 (2009)

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  • W.H. de Ronde, B.C. Daniels, A. Mugler, N.A. Sinitsyn and I. Nemenman, Mesoscopic statistical properties of multistep enzyme-mediated reactions, IET Syst. Biol. 3, 429-437 (2009)

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  • F. Tostevin and P.R. ten Wolde, Mutual information between input and output trajectories of biochemical networks, Phys.Rev.Lett. 102, (Article number: 218101), 1-4 (2009)

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  • M.J. Morelli, P.R. ten Wolde and R.J. Allen, DNA looping provides stability and robustness to the bacteriophage λ switch, PNAS 106, (20), 8101-8106 (2009)

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  • S.B. van Albada and P.R. ten Wolde, Differential affinity and catalytic activity of CheZ in E. coli chemotaxis, PLoS Comput. Biol. 5, (Article number: 1000378), 1-13 (2009)

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