Publications Quantitative Developmental Biology

Latest Publications

  • G. Huelsz-Prince, Snooping on cells in worms and mini-organs, Delft University of Technology, 2019-10-14

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  • L. Hartl, G. Huelsz-Prince, J.S. Zon and S.J. Tans, Apical constriction is necessary for crypt formation in small intestinal organoids, Dev. Biol. 450, 2: 76-81 (2019)

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  • G. Huelsz-Prince, A.L. DeVries, H.J. Bakker, J.S. Zon and K. Meister, Effect of Antifreeze Glycoproteins on Organoid Survival during and after Hypothermic Storage, Biomolecules 9, 3: 110: 1-9 (2019)

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  • N. Sachs, A. Papaspyropoulos, D.D. Zomer‐van Ommen, I. Heo, L. Böttinger, D. Klay, F. Weeber, G. Huelsz-Prince, N. Iakobachvili, G.D. Amatngalim, J. de Ligt, A. van Hoeck, N. Proost, M.C. Viveen, A. Lyubimova, L. Teeven, S. Derakhshan, J. Korving, H. Begthel, J.F. Dekkers, K. Kumawat, E. Ramos, M.F.M. van Oosterhout, G.J. Offerhaus, D.J. Wiener, E.P. Olimpio, K.K. Dijkstra, E.F. Smit, M. van der Linden, S. Jaksani, M. van de Ven, J. Jonkers, A.C. Rios, E.E. Voest, C.H.M. van Moorsel, C.K. van der Ent, E. Cuppen, A. Oudenaarden, F.E. Coenjaerts, L. Meyaard, L.J. Bont, P.J. Peters, S.J. Tans, J.S. Zon, S.F. Boj, R.G. Vries, J.M. Beekman and H. Clevers, Long‐term expanding human airway organoids for disease modeling, EMBO J. 38, 4: e100300:1-20 (2019)

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  • M. Doitsidou, G. Minevich, J.R. Kroll, G. Soete, S. Gowtham, H.C. Korswagen, J.S. Zon and O. Hobert, A Caenorhabditis elegans Zinc Finger Transcription Factor, ztf-6, Required for the Specification of a Dopamine Neuron-Producing Lineage Maria, G3: Genes, Genomes, Genet. 8, 1: 17-26 (2018)

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  • D. Katsanos, S.L. Koneru, L.M. Boukhibar, N. Gritti, R. Ghose, P.J. Appleford, M. Doitsidou, A. Woollard, J.S. Zon, R.J. Poole and M. Barkoulas, Stochastic loss and gain of symmetric divisions in the C-elegans epidermis perturbs robustness of stem cell number, PLoS Biol. 15, 11, Article number: e2002429: 1-31 (2017)

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  • N. Gritti, Time-lapse microscopy study of noise in development, Delft University of Technology, 2017-04-13

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  • J.S. Zon, Watching larvae grow up - in real time, Amsterdam Sci. [3], 5 (2017)

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  • G. Huelsz-Prince and J.S. Zon, Canalization of C. elegans Vulva Induction against Anatomical Variability, Cell Systems 4, 219-230 (2017)

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  • N. Gritti, S. Kienle, O. Filina and J.S. Zon, Long-term time-lapse microscopy of C. elegans post-embryonic development, Nature Commun. 7, Article number: 12500: 1-5 (2016)

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DEVELOPMENTAL BIOLOGY

Cells change their sensitivity to an EGF morphogen gradient to control EGF-induced gene expression
J.S. van Zon, S. Kienle, G. Huelsz-Prince, M. Barkoulas, A. van Oudenaarden
Nature Communications 6:8053 (2015)

Microfabricated Polyacrylamide Devices for the Controlled Culture of Growing Cells and Developing Organisms.
P. Nghe, S. Boulineau, S. Gude, P. Recouvreux, J.S. van Zon, S.J. Tans
PLoS ONE 8(9): e75537 (2013)

Robustness and epistasis in the C. elegans vulval signaling network revealed by pathway dosage modulation.
M. Barkoulas, J.S. van Zon, J. Milloz, A. van Oudenaarden, M.A. FĂ©lix.
Dev Cell. 24:64-75 (2013)

Direct cell reprogramming is a stochastic process amenable to acceleration.
J. Hanna, K. Saha, B. Pando, J. van Zon, C.J. Lengner, M.P. Creyghton, A. van Oudenaarden, R. Jaenisch.
Nature. 462:595-601 (2009)

 

MODELING OF BIOCHEMICAL NETWORKS

Movement and equipositioning of plasmids by ParA filament disassembly.
S. Ringgaard, J. van Zon, M. Howard, K. Gerdes.
Proc Natl Acad Sci U S A. 106:19369-74 (2009)

A mechanical bottleneck explains the variation in cup growth during FcgammaR phagocytosis.
J.S. van Zon, G. Tzircotis, E. Caron, M. Howard
Mol Syst Biol. 5:298 (2009)

An allosteric model of circadian KaiC phosphorylation.
J.S. van Zon, D.K. Lubensky, P.R. Altena, P.R. ten Wolde.
Proc Natl Acad Sci U S A. 104:7420-5 (2007)

Simulating biochemical networks at the particle level and in time and space: Green’s function reaction dynamics.
J.S. van Zon JS, P.R. ten Wolde
Phys Rev Lett. 94:128103 (2005)