Publications Physics of Cellular Interactions

Latest Publications

  • C. Niederauer, Development of Advanced Single-Molecule Fluorescence Microscopy Techniques and their Application for the Study of Protein-Protein Interactions in the Context of Immunological Signaling, Vrije Universiteit, 2023-10-19

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  • C. Niederauer, C. Nguyen, M. Wang-Henderson, J. Stein, S. Strauss, A. Cumberworth, F. Stehr, R. Jungmann, P. Schwille and K.A. Ganzinger, Dual-color DNA-PAINT single-particle tracking enables extended studies of membrane protein interactions, Nature Commun. 14, (1), 4345: 1-8 (2023)

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  • L. Van de Cauter, L. van Buren, G.H. Koenderink and K.A. Ganzinger, Exploring Giant Unilamellar Vesicle Production for Artificial Cells – Current Challenges and Future Directions, Small Methods, 2300416: 1-13 (2023)

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  • C. Niederauer, M. Seynen, J. Zomerdijk, M. Kamp and K.A. Ganzinger, The K2: Open-source simultaneous triple-color TIRF microscope for live-cell and single-molecule imaging, HardwareX 13, e00404: 1-19 (2023)

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  • L. Van de Cauter, Y. Jawale, D. Tam, L. Baldauf, G.H. Koenderink, A.M. Dogterom and K.A. Ganzinger, High-speed imaging of giant unilamellar vesicle production in cDICE, Biophys. J. 122, (3 S1), 300a-301a (2023)

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  • K.A. Ganzinger, C. Bonfio and A.P. Liu, Editorial: From reconstituting minimal cell-cell signaling systems to bioinspired synthetic communication networks, Front. Mol. Biosci. 9, 979163: 1-2 (2022)

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  • F. Stehr, J. Stein, J. Bauer, C. Niederauer, R. Jungmann, K.A. Ganzinger and P. Schwille, Tracking single particles for hours via continuous DNA-mediated fluorophore exchange, Nature Commun. 12, (1), 4432: 1-8 (2021)

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  • C. Niederauer, M. Wang-Henderson, J. Stein, F. Stehr, J. Bauer, R. Jungmann, P. Schwille and K.A. Ganzinger, Single-molecule studies of membrane protein interactions via continuous DNA-mediated fluorophore exchange, Eur. Biophys. J. with Biophysics Letters 50, (SI), 54-54 (2021)

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  • L. Van de Cauter, F. Fanalista, L. van Buren, N. De Franceschi, E. Godino, S. Bouw, C. Denelon, C. Dekker, G.H. Koenderink and K.A. Ganzinger, Optimized cDICE for Efficient Reconstitution of Biological Systems in Giant Unilamellar Vesicles, ACS Synth. Biol. 10, (7), 1690-1702 (2021)

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  • B. Ramm, A. Goychuk, A. Khmelinskaia, P. Blumhardt, H. Eto, K.A. Ganzinger, E. Frey and P. Schwille, A diffusiophoretic mechanism for ATP-driven transport without motor proteins, Nature Phys. 17, (7), 850-858 (2021)

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Publications prior to the Physics of Cellular Interactions Group

2019 Fernandes RA, Ganzinger KA, Tzou JC, Jönsson P, Lee SF, Palayret M, Santos AM, Carr AR, Ponjavic A, Chang VT, Macleod C, Lagerholm BC, Lindsay AE, Dushek O, Tilevik A, Davis SJ, Klenerman D A cell topography-based mechanism for ligand discrimination by the T cell receptor.

2018 Sonal, Ganzinger KA, Vogel SK, Mücksch J, Blumhardt P, Schwille P. Myosin-II activity generates a dynamic steady state with continuous actin turnover in a minimal actin cortex. J Cell Sci. 2018 Dec 11;132(4). pii: jcs219899.

2018 Wang Q, Taschner M, Ganzinger KA, Kelley C, Villasenor A, Heymann M, Schwille P, Lorentzen E, Mizuno N. Membrane association and remodeling by intraflagellar transport protein IFT172. Nat Commun. Nov 8;9(1):4684.

2018 Litschel T, Ganzinger KA, Movinkel T, Heymann M, Robinson T, Mutschler H, Schwille P. Freeze-thaw cycles induce content exchange between cell-sized lipid vesicles. New J of Phys. May 18;20(5):055008

2018 Santos AM, Ponjavic A, Fritzsche M, Fernandes RA,Bernardino Serna J,Wilcock MJ, Schneider F, Urbančič I, McColl J, Anzilotti C, Ganzinger KA, Aßmann M, Depoil D, Cornall J, Dustin ML, Klenerman D, Davis SJ, Eggeling C, Lee SF. Capturing resting T cells: the perils of PLL. Nat Immunol. Mar;19(3):203

2018 Ranasinghe RT, Challand MR, Ganzinger KA, Lewis BW, Softley C, Schmied WH, Horrocks MH, Shivji N, Chin JW, Spencer J, Klenerman D. Detecting RNA base methylations in single cells by in situ hybridization. Nat Commun Feb 13;9(1):655


2016 Chang* VT, Fernandes* RA, Ganzinger* KA, Lee* SF, Siebold C, McColl J, Jönsson P, Palayret M, Harlos K, Coles CH, Jones YE, Lui Y, Huang E, Gilbert RJC, Klenerman D, Aricescu AR and Davis SJ Initiation of T cell signaling by CD45 segregation at ‘close contacts’. Nat Immunol 17: 574–582, (*authors contributed equally)

2016 Iljina M, Garcia GA, Horrocks MH, Tosatto L, Choi ML, Ganzinger KA, Abramov AY, Gandhi S, Wood NW, Cremades N, Dobson CM, Knowles TPJ, Klenerman D. Kinetic model of the aggregation of alpha-synuclein provides insights into prion-like spreading. Proc Natl Acad Sci U S A 2016 113(9): E1206-E1215

2014 Ganzinger KA*, Narayan* P, Qamar S, Weimann L, Ranasinghe RT, Aguzzi A, Dobson CM, McColl J, George-Hyslop PS, Klenerman D. Single-molecule imaging reveals that small oligomers of amyloid-β1-42 interact with the cellular prion protein (PrPC), Chembiochem. 2014 Nov 24;15(17):2515-21. (*authors contributed equally)

2013 Weimann* L, Ganzinger* KA, McColl J, Irvine KL, Davis SJ, Gay NJ, Bryant CE, Klenerman D. A Quantitative Comparison of Single-Dye Tracking Analysis Tools Using Monte Carlo Simulations. PLoS One. 2013 8(5):e64287. (*authors contributed equally)

2013 Narayan* P, Ganzinger* KA, McColl J, Weimann L, Meehan S, Qamar S, Carver JA, Wilson MR, St George-Hyslop P, Dobson CM, Klenerman D. Single molecule characterization of the interactions between amyloid-β peptides and the membranes of hippocampal cells. J Am Chem Soc. 2013 Jan 30;135(4):1491-8. (*authors contributed equally)

2012 Gebendorfer KM, Drazic A, Le Y, Gundlach J, Bepperling A, Kastenmüller A, Ganzinger KA, Braun N, Franzmann TM, Winter J. Identification of a hypochlorite-specific transcription factor from Escherichia coli. J Biol Chem. 2012 Feb 24; 287(9):6892-903

2011 Narayan P, Orte A, Clarke RW, Bolognesi B, Hook S, Ganzinger KA, Meehan S, Wilson MR, Dobson CM, Klenerman D. The extracellular chaperone clusterin sequesters oligomeric forms of the amyloid-β (1-40) peptide. Nat Struct Mol Biol. 2011 Dec 18;19(1):79-8