Publications by the Physics of Behavior Group

Latest Publications

  • R.I.M. Cargill, T.S. Shimizu, E.T. Kiers and V. Kokkoris, Cellular anatomy of arbuscular mycorrhizal fungi, Current Biol. 35, (11), R545-R562 (2025)

    Read more

  • F. Avgidis, Criticality and Diversity in a Bacterial Sensory Network, VU University Amsterdam, 2025-06-06

    Read more

  • L. Oyarte Gálvez, C. Bisot, P. Bourrianne, R.I.M. Cargill, M. Klein, M. van Son, J. van Krugten, V.E.A. Caldas, T. Clerc, K.-K. Lin, F. Kahane, S. van Staalduine, J.D. Stewart, V. Terry, B. Turcu, S. van Otterdijk, A. Babu, M. Kamp, M. Seynen, B. Steenbeek, J. Zomerdijk, E. Tutucci, M. Sheldrake, C. Godin, V. Kokkoris, H.A. Stone, E.T. Kiers and T.S. Shimizu, A travelling-wave strategy for plant–fungal trade, Nature 639, (8053), 172-180 (2025)

    Read more

  • L. Vo, F. Avgidis, H.H. Mattingly, K. Edmonds, I. Burger, R. Balasubramanian, T.S. Shimizu, B.I. Kazmierczak and T. Emonet, Nongenetic adaptation by collective migration, PNAS 122, (8), e2423774122: 1-11 (2025)

    Read more

  • M. Klein, C. Bisot, L. Oyarte Gálvez, V. Kokkoris, T.S. Shimizu, L. Dong, J.T. Weedon, H. Bouwmeester and E.T. Kiers, The potential of strigolactones to shift competitive dynamics among two Rhizophagus irregularis strains, Front. microbiol. 15, 1470469: 1-13 (2024)

    Read more

  • E. C. Hammer, C. Arellano-Caicedo, P.M. Mafla-Endara, E.T. Kiers, T.S. Shimizu, Pelle Ohlsson and K. Aleklett, Hyphal exploration strategies and habitat modification of an arbuscular mycorrhizal fungus in microengineered soil chips, Fungal Ecol. 67, 101302: 1-10 (2024)

    Read more

  • T.S. Shimizu, E.T. Kiers and H.A. Stone, Vasculature: Exploring the dynamics of vascular adaptation, eLife 12, e88052: 1-3 (2023)

    Read more

  • M.W. Rozemuller, C. elegans behaviour and brain dynamics; a physical exploration, VU University Amsterdam, 2023-04-26

    Read more

  • K. Kamino, N. Kadakia, F. Avgidis, Z.X. Liu, K. Aoki, T.S. Shimizu and T. Emonet, Optimal inference of molecular interaction dynamics in FRET microscopy, PNAS 120, (15), e2211807120: 1-12 (2023)

    Read more

  • F.-Z. M. Rashid, E. Mahland, M. van der Vaart, D.E. C. Boer, M. Varela Alvarez, B. Henneman, D.J.W. Brocken, P. Voskamp, A.J. Blok, T.S. Shimizu, A.H. Meijer, M.S. Luijsterburg, J. Goedhart, F.G.E. Crémazy and R.T. Dame, HI-NESS: a family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein, Nucleic Acids Res. 50, (2), e10: 1-17 (2022)

    Read more