Publications - Physics of Behavior

  • K. Taute, S. Gude, S.J. Tans and T.S. Shimizu, High-throughput 3D tracking of bacteria on a standard phase contrast microscope, Nat. Commun. 6, (Article number: 8776), 1-9 (2015)

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  • P. Szymańska, N. Gritti, J.M. Keegstra, M. Soltani and B. Munsky, Using noise to control heterogeneity of isogenic populations in homogenous environments, Phys. Biol. 12, (4, Article number: 45003), 1-12 (2015)

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  • M.D. Lazova, Design and implementation of a bacterial signaling circuit, VU University Amsterdam, 2013-06-11

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  • M. Flores, T.S. Shimizu, P.R. ten Wolde and F. Tostevin, Signaling noise enhances chemotactic drift of E. coli, Phys. Rev. Lett. 109, (14, Article number: 148101), 1-5 (2012)

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  • M.D. Lazova, M.T. Butler, T.S. Shimizu and R.M. Harshey, Salmonella chemoreceptors McpB and McpC mediate a repellent response to L-cystine: a potential mechanism to avoid oxidative conditions, Mol. Microbiol. 84, (4), 697-711 (2012)

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  • M.D. Lazova, T. Ahmed, D. Bellomo, R. Stocker and T.S. Shimizu, Response rescaling in bacterial chemotaxis, PNAS 108, (33), 13870-13875 (2011)

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  • A. Celani, T.S. Shimizu and M. Vergassola, Molecular and functional aspects of bacterial chemotaxis, J. Stat. Phys. 144, (2 : Statistical Mechanics and Biology), 219-240 (2011)

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  • T. Ahmed, T.S. Shimizu and R. Stocker, Microfluidics for bacterial chemotaxis, Integr. Biol. 2, (11-12), 604-629 (2010)

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  • T. Ahmed, T.S. Shimizu and R. Stocker, Bacterial chemotaxis in linear and nonlinear steady microfluidic gradients, Nano Lett. 10, (9), 3379-3385 (2010)

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  • T.S. Shimizu, Yuhai Tu and H.C. Berg, A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli, Mol. Syst. Biol. 6, (Article number: 382), 1-14 (2010)

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