Publications by the Systems Biology Group

Latest Publications

  • A. van't Padje, M. Klein, V.E.A. Caldas, L. Oyarte Galvez, C. Broersma, N. Hoebe, I.R. Sanders, T.S. Shimizu and E.T. Kiers, Decreasing relatedness among mycorrhizal fungi in a shared plant network increases fungal network size but not plant benefit, Ecology Letters 25, (2), 509-520 (2021)

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  • F.-Z. M. Rashid, E. Mahland, M. van der Vaart, D.E. C. Boer, M. Varela Alvarez, B. Henneman, D.J.W. Brocken, P. Voskamp, A.J. Blok, T.S. Shimizu, A.H. Meijer, M.S. Luijsterburg, J. Goedhart, F.G.E. Crémazy and R.T. Dame, HI-NESS: a family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein, Nucleic Acids Res. 50, (2), e10: 1-17 (2021)

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  • J.J.H. Traets, Developmental timing and cell fate maintenance in Caenorhabditis elegans, VU University Amsterdam, 2021-02-10

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  • K. Kamino, J.M. Keegstra, J. Long, T. Emonet and T.S. Shimizu, Adaptive tuning of cell sensory diversity without changes in gene expression, Sci.Adv. 6, (46), eabc1087: 1-11 (2020)

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  • A. van't Padje, L. Oyarte Galvez, M. Klein, M.A. Hink, M. Postma, T.S. Shimizu and E.T. Kiers, Temporal tracking of quantum-dot apatite across in vitro mycorrhizal networks shows how host demand can influence fungal nutrient transfer strategies, ISME J. 15, 435-449 (2020)

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  • S. Gude, E. Pince, K.M. Taute, A.B. Seinen, T.S. Shimizu and S.J. Tans, Bacterial coexistence driven by motility and spatial competition, Nature 578, 588-592 (2020)

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  • M. Ivankovic, R. Haneckova, A. Thommen, M.A. Grohme, M. Vila-Farré, S. Werner and J.C. Rink, Model systems for regeneration: planarians, Development 146, (17), dev167684: 1-12 (2019)

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  • S.J. Helms, M.W. Rozemuller, A.C. Costa, L. Avery, G.J. Stephens and T.S. Shimizu, Modelling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behaviour across species, J. R. Soc. Interface 16, (157) (2019)

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  • F. Wu, P. Swain, L. Kuijpers, X. Zheng, K. Felter, M. Guurink, J. Solari, S. Jun, T.S. Shimizu, D. Chaudhuri, B.M. Mulder and C. Dekker, Cell boundary confinement sets the size and position of the E. coli chromosome, Current Biol. 29, (13), 2131-2144.e1-e4 (2019)

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  • M.D. Whiteside, G.D.A. Werner, V.E.A. Caldas, A. van't Padje, S.E. Dupin, B. Elbers, M. Bakker, M. Klein, G.A.K. Wyatt, M.A. Hink, M. Postma, B. Vaitla, R. Noë, T.S. Shimizu, S.A. West and E.T. Kiers, Mycorrhizal Fungi Respond to Resource Inequalityby Moving Phosphorus from Rich to PoorPatches across Networks, Current Biol. 29, (12), 1-8 (2019)

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