Publications - Systems Biology

  • S. Gude, E. Pince, K.M. Taute, A. Seinen, T.S. Shimizu and S.J. Tans, Bacterial coexistence driven by motility and spatial competition, Nature 578, 588-592 (2020)

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  • M. Ivankovic, R. Haneckova, A. Thommen, M.A. Grohme, M. Vila-Farré, S. Werner and J.C. Rink, Model systems for regeneration: planarians, Development (2019)

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  • S.J. Helms, M.W. Rozemuller, A.C. Costa, L. Avery, G.J. Stephens and T.S. Shimizu, Modelling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behaviour across species, J. R. Soc. Interface 16, 157 (2019)

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  • F. Wu, P. Swain, L. Kuijpers, X. Zheng, K. Felter, M. Guurink, J. Solari, S. Jun, T.S. Shimizu, D. Chaudhuri, B.M. Mulder and C. Dekker, Cell boundary confinement sets the size and position of the E. coli chromosome, Current Biol. 29, 13: 2131-2144.e1-e4 (2019)

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  • M.D. Whiteside, G.D.A. Werner, V.E.A. Caldas, A. Padje, S.E. Dupin, B. Elbers, M. Bakker, M. Klein, G.A.K. Wyatt, M.A. Hink, M. Postma, B. Vaitla, R. Noë, T.S. Shimizu, S.A. West and E.T. Kiers, Mycorrhizal Fungi Respond to Resource Inequalityby Moving Phosphorus from Rich to PoorPatches across Networks, Current Biol. 29, 12: 1-8 (2019)

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  • J. Solari, Spatial organization of the bacterial cell: in vivo imaging across scales, VU University Amsterdam, 2019-01-29

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  • A. Thommen, S. Werner, O. Frank, J. Philipp, O. Knittelfelder, Y. Quek, K. Fahmy, A. Shevchenko, B.M. Friedrich and F. Juelicher, Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians, eLife 8, (2019)

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  • M. Koler, E. Peretz, C. Aditya, T.S. Shimizu and A. Vaknin, Long-term positioning and polar preference of chemoreceptor clusters in E. coli, Nature Commun. 9, 4444: 1-10 (2018)

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  • J.M. Keegstra, Variation and fluctuations in a bacterial signaling network, VU University Amsterdam, 2018-05-17

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  • J. Solari, F. Anquez, K.M. Scherer and T.S. Shimizu: Bacterial Chemoreceptor Imaging at High Spatiotemporal Resolution Using Photoconvertible Fluorescent Proteins In: Methods Mol. Biol., Springer, 2018. - pp. 203-231

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